Hg_chrom1_TN10mRNA_556
Organism: Heterodera glycines Gene Locus: chr1:8543018-8545083 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 1.35 | 1.114 | 1.001 | 0.538 | 1.406 | 0.461 | 0.645 | 0.645 | 1.264 | 0.733 | 0.949 | 1.971 | 1.365 | 1.251 | 1.382 | 0.899 | 0.684 | 1.489 | 0.569 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_527
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.890
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKH
|
— | — |
5-25
|
0.991
|
— | — |
0.000
|
— | — |
0.807
|
0.220
|
0.068
|
0.336
|
0.102
|
0.043
|
0.060
|
0.006
|
0.053
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000498
|
2.000
|
5.000
|
Hsc_gene_9399.t1;Hsc_gene_9400.t1;Hsc_gene_9401.t1;Hsc_gene_9401.t2;Hsc_gene_9402.t1
|
— | — | — |
KAI3416553.1 hypothetical protein GPALN_006093 [Globodera pallida]
|
No
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15;299-310
|
1.000
|
16-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.884
|
34844.480
|
8.400
|
7.000
|
21.613
|
12.258
|
48.065
|
51.935
|
12.258
|
9.355
|
54.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
359.680
|
27.828
|
87.832
|
58.815
|
26.316
|
25.111
|
9.915
|
37.643
|
33.166
|
1446.177
|
840.601
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.431
|
0.943
|
-0.471
|
-1.195
|
— |
-1.337
|
— |
-1.788
|
— | — | — | — | — |
No JSON data available for plots.