Hg_chrom1_TN10mRNA_557
Organism: Heterodera glycines Gene Locus: chr1:8551454-8554348 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 1.535 | 0.934 | 0.843 | 1.222 | 1.567 | 0.757 | 0.367 | 0.869 | 1.057 | 1.482 | 1.294 | 1.834 | 0.658 | 0.649 | 1.257 | 0.521 | 1.037 | 0.752 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_528
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.490
|
0.067
|
0.017
|
0.608
|
0.244
|
0.177
|
0.084
|
0.018
|
0.092
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000741
|
5.000
|
1.000
|
Hsc_gene_9744.t1
|
Hsc_gene_13480.t1;Hsc_gene_9741.t1;Hsc_gene_9742.t2;Hsc_gene_9744.t1;Hsc_gene_9744.t2;Hsc_gene_9744.t3;Hsc_gene_9745.t3;Hsc_gene_9745.t5
|
— |
O94712.2 Uncharacterized protein C1259.12c [Schizosaccharomyces pombe 972h-]
|
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.744|GO:0005575_0.715|GO:0110165_0.714|GO:0005622_0.678|GO:0005737_0.585|GO:0009987_0.508
|
IPR001870+189-403+|IPR003877+254-402_257-400+|IPR013320+205-403+|IPR043136+192-409+|IPR044736+240-399+|IPR050618+131-400+
|
SM00449+254-402+
|
PF00622+257-400+SPRY_domain
|
— |
PTHR12864+131-400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
135-180
|
2.000
|
1-134;181-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
45816.040
|
7.737
|
3.500
|
26.161
|
10.269
|
50.856
|
49.144
|
13.692
|
12.469
|
49.389
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
89.546
|
29.233
|
21.549
|
30.844
|
27.138
|
23.589
|
260.184
|
14.596
|
0.000
|
239.091
|
136.623
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.668
|
— |
0.625
|
— | — |
3.472
|
-0.800
|
4.295
|
-8.710
|
5.804
|
— | — | — |
No JSON data available for plots.