Hg_chrom1_TN10mRNA_558
Organism: Heterodera glycines Gene Locus: chr1:8557504-8558332 Feature type: polypeptideProtein Sequence
Length: 157
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.296 | 1.629 | 1.042 | 0.659 | 0.955 | 1.143 | 0.834 | 1.274 | 1.557 | 0.947 | 1.062 | 1.499 | 3.539 | 0.857 | 0.39 | 1.092 | 0.731 | 0.772 | 0.49 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_529
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.670
|
0.101
|
0.025
|
0.483
|
0.492
|
0.178
|
0.073
|
0.091
|
0.178
|
0.260
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000365
|
7.000
|
1.000
|
Hsc_gene_3843.t1
|
Hsc_gene_13483.t1;Hsc_gene_13483.t2;Hsc_gene_5428.t1;Hsc_gene_5428.t2
|
— |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
CRG92551
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.765|GO:0005575_0.590|GO:0110165_0.590|GO:0005622_0.536|GO:0005737_0.526|GO:0016020_0.504
|
IPR001870+1-151+|IPR003877+28-150_85-148+|IPR013320+8-151+|IPR043136+2-156+|IPR044736+13-147+|IPR050618+12-148+
|
SM00449+28-150+
|
PF00622+85-148+SPRY_domain
|
— |
PTHR12864+12-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-157
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
18038.530
|
5.599
|
-2.000
|
22.930
|
18.471
|
46.497
|
53.503
|
11.465
|
11.465
|
45.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
20.705
|
7.065
|
20.487
|
9.978
|
30.976
|
22.679
|
44.431
|
7.767
|
0.514
|
36.431
|
21.038
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.303
|
— |
-0.925
|
1.598
|
— |
0.970
|
-1.665
|
2.653
|
— |
3.691
|
— | — | — |
No JSON data available for plots.