Hg_chrom1_TN10mRNA_56
Organism: Heterodera glycines Gene Locus: chr1:428005-431421 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.515 | 0.186 | 0.677 | 0.0 | 1.596 | 0.887 | 1.045 | 0.532 | 0.059 | 0.072 | 2.418 | 0.156 | 0.0 | 1.176 | 2.551 | 2.014 | 1.526 | 0.081 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_54
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRAKTSTKKRGRPAKK,RKTKKRAASAGETKPLRR,KKRAASAGETKPLRRSAR,RRSPAGRGGGRSQTPRKKK,KKKAPGPRSRTPGRRVKKP,RRVKKPSTKKSPAPRRAKT,KKSPAPRRAKTSTKKRGRP,RKTAGGRANKQTKSRGRKT,TKKKPTRKSAAAGRSTKQKASRGGRAGNKKA
|
11-40
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.923
|
0.040
|
0.032
|
0.251
|
0.033
|
0.021
|
0.040
|
0.002
|
0.070
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000710
|
5.000
|
1.000
|
Hsc_gene_19975.t1
|
Hsc_gene_1568.t1;Hsc_gene_19975.t1;Hsc_gene_20639.t1;Hsc_gene_2275.t1;Hsc_gene_9562.t1
|
— | — | — |
HRO99482
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-376
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
40287.260
|
11.562
|
59.000
|
42.819
|
1.064
|
70.479
|
29.521
|
29.521
|
13.298
|
56.383
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
2005.915
|
36.385
|
31.015
|
84.047
|
141.883
|
7655.799
|
166.059
|
9948.392
|
7.550
|
1996.373
|
1144.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.462
|
1.071
|
1.549
|
0.725
|
5.767
|
-5.516
|
— |
-5.757
|
-8.150
|
— |
-3.595
|
— | — |
No JSON data available for plots.