Hg_chrom1_TN10mRNA_561
Organism: Heterodera glycines Gene Locus: chr1:8566153-8566804 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 0.791 | 0.866 | 0.938 | 1.134 | 1.395 | 1.215 | 0.68 | 1.058 | 1.471 | 0.206 | 1.2 | 1.512 | 1.308 | 1.249 | 0.777 | 0.335 | 1.031 | 1.57 | 0.8 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_532
|
— | — |
0.667
|
1.000
|
— |
1.000
|
— |
1.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.456
|
0.574
|
0.052
|
0.545
|
0.143
|
0.081
|
0.090
|
0.222
|
0.082
|
0.424
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.920|GO:0005575_0.886|GO:0110165_0.870|GO:0009987_0.846|GO:0065007_0.788|GO:0005622_0.774|GO:0005737_0.774|GO:0050789_0.770|GO:0050896_0.764|GO:0050794_0.758|GO:0051716_0.736|GO:0043226_0.726|GO:0032502_0.720|GO:0048856_0.720|GO:0048518_0.715|GO:0042221_0.712|GO:0043229_0.706|GO:0048522_0.706|GO:0071840_0.706|GO:0016043_0.705|GO:0030154_0.698|GO:0048869_0.698|GO:0048468_0.691|GO:0070887_0.688|GO:0008219_0.683|GO:0042592_0.683|GO:0050793_0.683|GO:0012501_0.682|GO:0044085_0.682|GO:0009653_0.681|GO:0006996_0.680|GO:0022607_0.679|GO:0045595_0.678|GO:0051128_0.678|GO:0019725_0.677|GO:0010038_0.676|GO:0048646_0.676|GO:0051094_0.676|GO:0045597_0.675|GO:0051130_0.675|GO:0007005_0.674|GO:0007010_0.670|GO:0010638_0.670|GO:0010927_0.670|GO:0030029_0.670|GO:0030036_0.670|GO:0030239_0.670|GO:0031032_0.670|GO:0032956_0.670|GO:0032970_0.670|GO:0032989_0.670|GO:0033043_0.670|GO:0042692_0.670|GO:0045214_0.670|GO:0046716_0.670|GO:0051146_0.670|GO:0051147_0.670|GO:0051149_0.670|GO:0051153_0.670|GO:0051155_0.670|GO:0051493_0.670|GO:0051495_0.670|GO:0051592_0.670|GO:0055001_0.670|GO:0055002_0.670|GO:0060297_0.670|GO:0060298_0.670|GO:0061061_0.670|GO:0070266_0.670|GO:0070925_0.670|GO:0071248_0.670|GO:0071277_0.670|GO:0097300_0.670|GO:0097435_0.670|GO:0110020_0.670|GO:0140694_0.670|GO:1902903_0.670|GO:1902905_0.670|GO:0043228_0.567|GO:0043232_0.567|GO:0099080_0.549|GO:0030016_0.540|GO:0030017_0.540|GO:0031430_0.540|GO:0031672_0.540|GO:0043292_0.540|GO:0099081_0.540|GO:0099512_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-147
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
16186.470
|
4.547
|
-5.000
|
20.408
|
11.565
|
36.735
|
63.265
|
8.844
|
11.565
|
51.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.507
|
0.452
|
0.143
|
0.859
|
1.127
|
1.236
|
1.820
|
0.279
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.