Hg_chrom1_TN10mRNA_568
Organism: Heterodera glycines Gene Locus: chr1:8596706-8597930 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.472 | 0.23 | 0.436 | 0.686 | 0.568 | 0.753 | 0.949 | 1.547 | 0.684 | 0.767 | 1.489 | 0.264 | 1.156 | 3.165 | 1.447 | 1.453 | 0.767 | 0.243 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_539
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVK,RRTTTNAASTAAAGRSRSR,RRDAWYNNNNNGMEKRGDR,SRSRSTHTGRRSASRRATGNRATGRSPSVRNASRRVSRRVSSARKSSRRRRRIVARRATPKKRSKSAKKRGRGRPRKPQRGRSARAQR
|
62-82
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.941
|
0.054
|
0.015
|
0.229
|
0.034
|
0.029
|
0.045
|
0.030
|
0.120
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000504
|
5.000
|
2.000
|
Hsc_gene_9310.t1;Hsc_gene_9319.t1
|
— | — | — | — |
MCH2478454
|
0.960
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
— |
IPR000637+90-100+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-200
|
1.000
|
201-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
35361.600
|
12.356
|
51.000
|
27.848
|
5.380
|
55.380
|
44.620
|
22.468
|
5.380
|
53.165
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
129.517
|
0.000
|
0.717
|
7.505
|
27.985
|
737.119
|
12.184
|
521.917
|
0.000
|
76.354
|
43.631
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.337
|
3.477
|
1.870
|
4.730
|
-5.902
|
-0.610
|
-5.269
|
-7.064
|
— | — | — | — |
No JSON data available for plots.