Hg_chrom1_TN10mRNA_57
Organism: Heterodera glycines Gene Locus: chr1:431699-433974 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.477 | 0.738 | 1.299 | 0.684 | 0.926 | 1.323 | 0.898 | 0.794 | 1.146 | 1.448 | 0.661 | 1.167 | 0.992 | 0.916 | 1.296 | 0.567 | 0.716 | 1.142 | 0.305 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_55
|
— | — |
1.556
|
3.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.604
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.439
|
0.406
|
0.080
|
0.743
|
0.332
|
0.084
|
0.126
|
0.014
|
0.126
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000490
|
5.000
|
2.000
|
Hsc_gene_19435.t1;Hsc_gene_8566.t1
|
Hsc_gene_19435.t1;Hsc_gene_8566.t1
|
— |
Q18493.2 Probable UDP-N-acetylglucosamine pyrophosphorylase [Caenorhabditis elegans]
|
KAI1717761.1 UTP--glucose-1-phosphate uridylyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070569
|
GO:0008150_0.798|GO:0003674_0.759|GO:0005575_0.748|GO:0110165_0.738|GO:0009987_0.728|GO:0008152_0.688|GO:0003824_0.667|GO:0044237_0.649|GO:0016020_0.636|GO:0016740_0.582|GO:0016772_0.551|GO:0005622_0.544|GO:0005737_0.529|GO:0044238_0.512
|
IPR002618+10-245+|IPR029044+1-250_3-245+|IPR039741+4-245+
|
— |
PF01704+10-245+UTP--glucose-1-phosphate_uridylyltransferase
|
— |
PTHR11952+4-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
27348.320
|
5.379
|
-3.000
|
25.000
|
7.540
|
41.667
|
58.333
|
12.302
|
12.698
|
53.175
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
275.597
|
248.641
|
239.347
|
331.211
|
407.170
|
589.409
|
637.580
|
341.607
|
77.954
|
99.158
|
90.071
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.284
|
0.277
|
0.577
|
0.266
|
0.549
|
— |
-0.892
|
1.042
|
— | — |
2.359
|
— | — |
No JSON data available for plots.