Hg_chrom1_TN10mRNA_583
Organism: Heterodera glycines Gene Locus: chr1:8860039-8861522 Feature type: polypeptideProtein Sequence
Length: 326
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 1.141 | 0.558 | 1.375 | 0.716 | 1.022 | 1.826 | 1.687 | 1.159 | 0.788 | 0.511 | 1.444 | 1.022 | 1.357 | 1.315 | 0.92 | 0.654 | 0.837 | 0.708 | 0.632 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_554
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
SGGRKSGGGRGGGAGGGRKNGPGRGGGGRGGGGKGGGR
|
— | — | — | — |
1-24
|
0.952
|
1.000
|
0.000
|
0.000
|
0.514
|
0.083
|
0.016
|
0.578
|
0.268
|
0.035
|
0.073
|
0.002
|
0.167
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001056
|
4.000
|
1.000
|
Hsc_gene_13472.t1
|
— | — |
Q7PT10.3 Heat shock protein 83 [Anopheles gambiae]
|
ACR57216.1 Hsp90 [Heterodera glycines]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.792|GO:0110165_0.781|GO:0008150_0.724|GO:0003674_0.671|GO:0009987_0.638|GO:0005622_0.592|GO:0005488_0.577|GO:0050896_0.567|GO:0016020_0.565|GO:0005737_0.547|GO:0043226_0.519
|
IPR001404+22-88+|IPR019805+40-49+|IPR036890+19-92_28-88+
|
— | — | — |
PTHR11528+22-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
125-196
|
2.000
|
1-124;197-326
|
4gqt_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
34459.080
|
8.556
|
13.500
|
20.552
|
10.123
|
39.877
|
60.123
|
13.190
|
7.362
|
58.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.363
|
0.149
|
0.000
|
0.123
|
0.942
|
1.254
|
0.807
|
0.956
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |