Hg_chrom1_TN10mRNA_584
Organism: Heterodera glycines Gene Locus: chr1:8864440-8871539 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.985 | 0.635 | 0.248 | 0.66 | 0.82 | 1.121 | 0.878 | 2.049 | 1.093 | 1.255 | 0.373 | 1.286 | 1.29 | 0.631 | 1.784 | 1.249 | 1.478 | 0.994 | 2.102 | 0.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_555
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
89-109
|
1.000
|
74-103
|
1.000
|
— | — |
0.001
|
— | — |
0.132
|
0.902
|
0.082
|
0.134
|
0.121
|
0.175
|
0.160
|
0.098
|
0.166
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000730
|
4.000
|
2.000
|
Hsc_gene_16206.t1;Hsc_gene_6844.t1
|
Hsc_gene_16206.t1;Hsc_gene_17312.t1;Hsc_gene_676.t1;Hsc_gene_6844.t1
|
— |
Q6DG32.1 Solute carrier family 25 member 36-A [Danio rerio]
|
KAI3407796.1 hypothetical protein GPALN_014134 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015218
|
GO:0008150_0.844|GO:0005575_0.837|GO:0110165_0.837|GO:0009987_0.766|GO:0016020_0.758|GO:0005622_0.727|GO:0003674_0.706|GO:0043226_0.689|GO:0005737_0.688|GO:0043229_0.664|GO:0043227_0.658|GO:0043231_0.648|GO:0051179_0.625|GO:0006810_0.621|GO:0051234_0.621|GO:0071705_0.558|GO:0055085_0.533|GO:0005215_0.507|GO:0022857_0.507
|
IPR018108+16-146_16-150_157-239_158-242_254-337_255-334+|IPR023395+3-71_15-334_72-337+|IPR049562+16-339+
|
— |
PF00153+16-150_158-242_255-334+Mitochondrial_carrier_protein
|
— |
PTHR45829+16-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
356-366
|
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
41054.090
|
10.611
|
25.500
|
21.585
|
13.661
|
46.448
|
53.552
|
15.301
|
6.284
|
49.454
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
936.075
|
1438.679
|
1064.359
|
740.677
|
661.916
|
578.509
|
564.105
|
596.619
|
224.832
|
1809.879
|
1130.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.665
|
-1.095
|
-0.414
|
-0.193
|
-0.180
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.