Hg_chrom1_TN10mRNA_585
Organism: Heterodera glycines Gene Locus: chr1:8864682-8871539 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.639 | 0.3 | 0.758 | 0.778 | 1.268 | 1.014 | 2.198 | 1.282 | 1.188 | 0.5 | 1.293 | 1.526 | 0.634 | 1.794 | 1.295 | 1.126 | 0.916 | 2.113 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_555
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KKKK
|
89-109
|
1.000
|
74-103
|
1.000
|
— | — |
0.001
|
— | — |
0.173
|
0.731
|
0.046
|
0.211
|
0.122
|
0.098
|
0.116
|
0.087
|
0.067
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000730
|
4.000
|
2.000
|
Hsc_gene_16206.t1;Hsc_gene_6844.t1
|
Hsc_gene_17312.t1
|
— |
Q6DG32.1 Solute carrier family 25 member 36-A [Danio rerio]
|
KAI3407796.1 hypothetical protein GPALN_014134 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015218
|
GO:0008150_0.846|GO:0005575_0.837|GO:0110165_0.831|GO:0009987_0.762|GO:0016020_0.762|GO:0005622_0.754|GO:0043226_0.725|GO:0043229_0.715|GO:0005737_0.709|GO:0043227_0.691|GO:0003674_0.690|GO:0043231_0.685|GO:0051179_0.607|GO:0006810_0.604|GO:0051234_0.604|GO:0071705_0.534|GO:0055085_0.525|GO:0005739_0.503
|
IPR018108+16-146_16-150_168-250_180-253_265-354_266-327+|IPR023395+15-326_68-328+|IPR049562+16-327+
|
— |
PF00153+16-150_180-253_266-327+Mitochondrial_carrier_protein
|
— |
PTHR45829+16-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
41031.170
|
10.840
|
29.000
|
22.802
|
14.286
|
46.429
|
53.571
|
16.484
|
6.319
|
47.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
936.075
|
1438.679
|
1064.359
|
740.677
|
661.916
|
578.509
|
564.105
|
596.619
|
224.832
|
1809.879
|
1130.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.665
|
-1.095
|
-0.414
|
-0.193
|
-0.180
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.