Hg_chrom1_TN10mRNA_589
Organism: Heterodera glycines Gene Locus: chr1:8968811-8970286 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.422 | 1.084 | 1.602 | 0.536 | 0.604 | 1.329 | 0.617 | 1.295 | 1.842 | 1.05 | 1.492 | 1.524 | 1.871 | 0.897 | 1.692 | 0.74 | 0.34 | 0.785 | 2.391 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_559
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
HQRKKKKKKRIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.637
|
0.221
|
0.019
|
0.426
|
0.140
|
0.046
|
0.049
|
0.015
|
0.097
|
0.403
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000008
|
59.000
|
13.000
|
Hsc_gene_11034.t1;Hsc_gene_12617.t1;Hsc_gene_14779.t1;Hsc_gene_16431.t1;Hsc_gene_17790.t1;Hsc_gene_20442.t1;Hsc_gene_20467.t1;Hsc_gene_20494.t1;Hsc_gene_25465.t1;Hsc_gene_26541.t1;Hsc_gene_3010.t1;Hsc_gene_3536.t1;Hsc_gene_9380.t1
|
Hsc_gene_14780.t1;Hsc_gene_24619.t1
|
— | — |
KAI3411155.1 hypothetical protein GPALN_003238 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
163-193
|
1.000
|
1-162
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
22845.480
|
10.416
|
13.500
|
33.161
|
13.472
|
50.259
|
49.741
|
20.725
|
12.435
|
40.933
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
19.013
|
8.139
|
8.194
|
21.370
|
23.322
|
10.899
|
12.377
|
7.893
|
4.146
|
45.501
|
27.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.257
|
1.493
|
— |
-1.083
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.