Hg_chrom1_TN10mRNA_599
Organism: Heterodera glycines Gene Locus: chr1:9037248-9039393 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.318 | 0.736 | 0.419 | 0.675 | 1.142 | 0.53 | 1.215 | 0.99 | 1.313 | 0.736 | 2.143 | 1.35 | 1.401 | 1.9 | 0.694 | 1.261 | 0.797 | 0.623 | 1.072 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_569
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RNVKRRL
|
— | — |
54-77
|
0.942
|
— | — |
0.000
|
— | — |
0.388
|
0.140
|
0.064
|
0.593
|
0.192
|
0.221
|
0.358
|
0.133
|
0.172
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001057
|
4.000
|
1.000
|
Hsc_gene_13995.t1
|
— | — |
P15731.1 Ubiquitin-conjugating enzyme E2 4 [Saccharomyces cerevisiae S288C]
|
XP_048760905.1 ubiquitin-conjugating enzyme E2 D2-like [Ostrea edulis]
|
KAB8293366
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.851|GO:0003674_0.784|GO:0008152_0.708|GO:0044238_0.696|GO:0043170_0.691|GO:0003824_0.638|GO:0019538_0.622|GO:0016740_0.611|GO:0140096_0.596|GO:0016746_0.588|GO:0016755_0.582|GO:0019787_0.582|GO:0004842_0.580|GO:0005575_0.509
|
IPR000608+98-247_101-242_102-241+|IPR016135+95-247_99-246+|IPR050113+98-242+
|
SM00212+101-247+
|
PF00179+102-241+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000060+95-247+Ubiquitin_conjugating_enzyme_(UbcB)
|
PTHR24067+98-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-247
|
7xed_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
28387.800
|
10.533
|
18.000
|
24.696
|
11.741
|
47.368
|
52.632
|
16.599
|
8.097
|
47.773
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
161.102
|
1.067
|
2.930
|
3.863
|
7.980
|
332.656
|
11.974
|
1119.320
|
0.000
|
149.901
|
85.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.716
|
— | — |
5.402
|
-4.787
|
1.638
|
-6.400
|
-8.033
|
— | — | — | — |
No JSON data available for plots.