Hg_chrom1_TN10mRNA_601
Organism: Heterodera glycines Gene Locus: chr1:9069340-9070542 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.409 | 1.169 | 1.188 | 0.347 | 0.838 | 0.902 | 0.838 | 1.256 | 1.005 | 2.037 | 1.37 | 0.887 | 0.977 | 0.773 | 0.923 | 1.005 | 0.989 | 0.838 | 0.773 | 1.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_571
|
— | — |
2.111
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
3.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.853
|
0.582
|
0.111
|
0.427
|
0.102
|
0.076
|
0.030
|
0.030
|
0.084
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005674
|
2.000
|
0.000
|
0.000
|
Hsc_gene_5215.t1
|
— | — |
CAD2185559.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676
|
— |
IPR017964+113-121+|IPR023211+66-178+|IPR043502+6-188+
|
— | — | — |
PTHR33568+4-188+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
22558.970
|
9.206
|
6.500
|
27.638
|
11.055
|
49.246
|
50.754
|
16.080
|
11.558
|
45.729
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
208.078
|
3.062
|
0.735
|
2.878
|
5.307
|
2.239
|
1.622
|
0.547
|
47.257
|
868.751
|
516.682
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.286
|
— |
2.079
|
— | — | — | — | — |
-4.342
|
— |
-6.952
|
— | — |
No JSON data available for plots.