Hg_chrom1_TN10mRNA_605
Organism: Heterodera glycines Gene Locus: chr1:9075727-9076834 Feature type: polypeptideProtein Sequence
Length: 306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 1.52 | 0.891 | 0.789 | 2.179 | 0.754 | 1.167 | 0.49 | 0.654 | 0.618 | 1.238 | 2.691 | 0.817 | 0.628 | 2.134 | 0.7 | 0.857 | 0.594 | 0.754 | 0.481 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_575
|
— | — |
2.222
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
4.000
|
2.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,RRLKRNR,KRGGGQRKRERERKKRAE,RKRERERKKRAEEAKKAQR,RSSGKRKREKAREAKKLRG
|
16-45
|
0.706
|
— | — | — | — |
0.000
|
— | — |
0.823
|
0.049
|
0.008
|
0.412
|
0.068
|
0.026
|
0.049
|
0.002
|
0.132
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002921
|
2.000
|
1.000
|
Hsc_gene_5210.t1
|
Hsc_gene_5210.t1
|
— | — | — |
WP_055973729
|
0.940
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-306
|
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
34894.020
|
7.882
|
3.500
|
37.582
|
6.536
|
57.190
|
42.810
|
19.608
|
17.974
|
46.732
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
436.834
|
1.384
|
1.868
|
1.405
|
3.280
|
8.298
|
0.610
|
1.910
|
26.493
|
1884.246
|
1088.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.351
|
-3.750
|
-2.224
|
— |
-6.287
|
— |
-8.653
|
— | — |
No JSON data available for plots.