Hg_chrom1_TN10mRNA_614
Organism: Heterodera glycines Gene Locus: chr1:9292539-9296326 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.004 | 1.003 | 1.406 | 1.039 | 1.353 | 0.371 | 1.559 | 1.066 | 1.361 | 0.908 | 1.411 | 1.132 | 1.291 | 0.93 | 1.199 | 0.747 | 0.908 | 1.107 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_584
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
28-78
|
0.881
|
— | — |
0.000
|
— | — |
0.810
|
0.146
|
0.016
|
0.509
|
0.155
|
0.184
|
0.161
|
0.011
|
0.083
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002932
|
2.000
|
1.000
|
Hsc_gene_13679.t1
|
Hsc_gene_13679.t1
|
— |
Q4R372.1 F-box only protein 25 [Macaca fascicularis]
|
KAF7639172.1 F-box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.827|GO:0110165_0.827|GO:0008150_0.807|GO:0005622_0.767|GO:0016020_0.747|GO:0043226_0.707|GO:0043229_0.683|GO:0043227_0.663|GO:0043231_0.640|GO:0005634_0.545|GO:0008152_0.507|GO:0043170_0.507
|
IPR001810+286-334+|IPR036047+289-394+|IPR040394+1-29+
|
— | — | — |
PTHR13123+1-29+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-146
|
1.000
|
147-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
46782.650
|
6.667
|
1.500
|
25.420
|
10.072
|
47.962
|
52.038
|
13.669
|
11.751
|
50.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1910.933
|
1112.395
|
1067.866
|
2067.062
|
631.294
|
1288.644
|
1193.649
|
5893.479
|
938.779
|
2685.854
|
1937.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.288
|
0.757
|
1.062
|
-1.743
|
1.045
|
— |
2.087
|
-2.161
|
— | — |
-1.796
|
— | — |
No JSON data available for plots.