Hg_chrom1_TN10mRNA_615
Organism: Heterodera glycines Gene Locus: chr1:9297953-9300940 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.399 | 1.964 | 0.959 | 0.819 | 1.363 | 1.488 | 0.628 | 0.923 | 1.466 | 1.034 | 1.359 | 1.242 | 2.125 | 0.558 | 0.538 | 0.905 | 0.995 | 0.84 | 0.812 | 0.543 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_585
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.106
|
0.009
|
0.551
|
0.253
|
0.225
|
0.127
|
0.033
|
0.147
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000147
|
1.000
|
12.000
|
Hsc_gene_13676.t1;Hsc_gene_13694.t1;Hsc_gene_13694.t2;Hsc_gene_13694.t3;Hsc_gene_13694.t4;Hsc_gene_25053.t1;Hsc_gene_25053.t2;Hsc_gene_25053.t3;Hsc_gene_25054.t1;Hsc_gene_25054.t2;Hsc_gene_26644.t1;Hsc_gene_26644.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.956|GO:0009987_0.904|GO:0065007_0.824|GO:0050789_0.804|GO:0050794_0.785|GO:0008152_0.778|GO:0044238_0.760|GO:0019222_0.725|GO:0048519_0.724|GO:0048523_0.714|GO:0080090_0.713|GO:0005575_0.635|GO:0110165_0.633|GO:0005622_0.600|GO:0016020_0.559|GO:0043226_0.549|GO:0043229_0.541|GO:0005737_0.521|GO:0043227_0.508
|
IPR001870+179-372+|IPR003877+252-369+|IPR013320+189-372+|IPR043136+175-379+|IPR044736+233-368+
|
— |
PF00622+252-369+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
43546.380
|
5.721
|
-3.500
|
26.913
|
12.401
|
53.562
|
46.438
|
13.456
|
13.456
|
45.646
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
888.616
|
3.991
|
13.616
|
17.622
|
12.762
|
11.780
|
101.603
|
12.405
|
11.057
|
3814.235
|
2184.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.545
|
2.008
|
— | — | — |
3.107
|
— |
3.168
|
— | — | — | — | — |
No JSON data available for plots.