SCN Proteipedia

Hg_chrom1_TN10mRNA_633

Organism: Heterodera glycines Gene Locus: chr1:9403809-9410974 Feature type: polypeptide

Protein Sequence

Length: 1,070

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.532	1.847	0.884	0.29	1.246	1.534	0.467	0.981	1.288	1.048	1.968	1.209	1.48	0.755	1.183	1.148	0.935	0.439	0.216	0.55	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_602	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKRIR,RSPKRLK,RKTSTTSKKDETKLKIK,RKKDGFLFPPETRQKYK,RKLDLQIPLKFRKNKSK,PKRTKKKPNNEKKISKN,KKPISEQIKSSNEKKSEK,RKVSMEQMIERKKRMRKRK,RKKRMRKRKKEMEEKKKKE,KKRMRKRKKEMEEKKKKEQ	—	—	24-58	0.880	—	—	0.002	—	—	0.236	0.089	0.025	0.401	0.112	0.064	0.151	0.011	0.249	0.321

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002953	1.000	2.000	Hsc_gene_22021.t1;Hsc_gene_22021.t2	Hsc_gene_22021.t1;Hsc_gene_22021.t2	—	O14986.2 Phosphatidylinositol 4-phosphate 5-kinase type-1 beta [Homo sapiens]	KAI3410976.1 Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma [Globodera pallida]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046488\|GO:0052742	GO:0005575_0.885\|GO:0110165_0.885\|GO:0008150_0.836\|GO:0009987_0.782\|GO:0005622_0.780\|GO:0003674_0.767\|GO:0016020_0.744\|GO:0003824_0.597\|GO:0043226_0.595\|GO:0016740_0.590\|GO:0016772_0.580\|GO:0016301_0.576\|GO:0016773_0.576\|GO:0001727_0.569\|GO:0005737_0.569\|GO:0052742_0.569\|GO:0043229_0.566\|GO:0008152_0.558\|GO:0044238_0.558\|GO:0044237_0.516\|GO:0071944_0.515\|GO:0043227_0.513\|GO:0005886_0.506	IPR002498+539-943_570-944_678-840+\|IPR023610+679-940+\|IPR027483+735-957+\|IPR027484+546-732+	SM00330+570-944+	PF01504+678-840+Phosphatidylinositol-4-phosphate_5-Kinase	—	PTHR23086+679-940+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-460;965-1070	1.000	461-964	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.720	123731.850	10.473	79.500	33.084	9.439	60.748	39.252	20.748	12.336	42.710

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	green	1680.504	11.455	178.134	117.821	82.550	35.665	19.658	14.044	3276.927	4722.261	4102.832

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.731	3.229	-0.487	-0.544	-1.196	-0.855	-1.450	—	—	-4.647	-5.694	—	—

No JSON data available for plots.

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