Hg_chrom1_TN10mRNA_635
Organism: Heterodera glycines Gene Locus: chr1:9426339-9428036 Feature type: polypeptideProtein Sequence
Length: 110
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.423 | 0.423 | 1.983 | 1.567 | 1.212 | 0.233 | 0.866 | 1.364 | 1.616 | 1.351 | 0.551 | 1.07 | 2.778 | 0.699 | 0.186 | 1.039 | 1.49 | 0.964 | 0.0 | 0.267 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_604
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.878
|
0.661
|
0.000
|
0.000
|
0.066
|
0.424
|
0.054
|
0.202
|
0.221
|
0.073
|
0.081
|
0.017
|
0.123
|
0.766
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002954
|
2.000
|
1.000
|
Hsc_gene_19840.t1
|
— | — | — |
AVA09706.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
— |
IPR001534+21-98_41-99+|IPR038479+34-104+
|
— |
PF01060+41-99+Transthyretin-like_family
|
— |
PTHR21700+21-98+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
12109.680
|
3.834
|
-13.500
|
25.455
|
13.636
|
44.545
|
55.455
|
7.273
|
18.182
|
54.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
63.233
|
10.954
|
159.515
|
55.446
|
19.991
|
10.123
|
52.286
|
424.985
|
0.000
|
1.656
|
0.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.639
|
2.203
|
-1.417
|
-1.505
|
— |
2.380
|
5.305
|
-2.890
|
— |
6.650
|
— | — | — |