Hg_chrom1_TN10mRNA_636
Organism: Heterodera glycines Gene Locus: chr1:9428440-9431086 Feature type: polypeptideProtein Sequence
Length: 573
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.258 | 1.136 | 0.793 | 0.181 | 1.076 | 0.537 | 0.457 | 1.222 | 1.319 | 1.58 | 0.952 | 1.027 | 2.23 | 0.805 | 1.104 | 0.773 | 1.03 | 0.793 | 1.611 | 0.667 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_605
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.509
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-20
|
0.979
|
0.997
|
1.000
|
0.000
|
0.090
|
0.067
|
0.024
|
0.176
|
0.879
|
0.290
|
0.455
|
0.062
|
0.308
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002955
|
2.000
|
1.000
|
Hsc_gene_19839.t1
|
Hsc_gene_11882.t1;Hsc_gene_11883.t1;Hsc_gene_8482.t1;Hsc_gene_8484.t1
|
— |
Q18081.3 Putative UDP-glucuronosyltransferase ugt-48 [Caenorhabditis elegans]
|
KAF7640207.1 UDPGT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.806|GO:0003674_0.746|GO:0003824_0.652|GO:0009987_0.645|GO:0005575_0.600|GO:0110165_0.600|GO:0016740_0.589|GO:0016757_0.562|GO:0016020_0.556|GO:0008194_0.552|GO:0008152_0.534|GO:0016758_0.503|GO:0071944_0.501
|
IPR002213+37-485_45-554+|IPR035595+385-428+|IPR050271+11-540+
|
— |
PF00201+45-554+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+304-483+UDP-glucuronosyltransferase
|
PTHR48043+11-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
570-573
|
1.000
|
1-569
|
7q3s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
65263.460
|
9.055
|
12.000
|
24.956
|
14.834
|
43.630
|
56.370
|
14.136
|
10.820
|
45.550
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
405.907
|
29.493
|
421.569
|
310.899
|
221.754
|
66.388
|
293.983
|
635.437
|
215.478
|
871.912
|
590.583
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.611
|
3.262
|
-0.332
|
-0.518
|
-1.728
|
2.158
|
3.185
|
— | — | — | — | — | — |