Hg_chrom1_TN10mRNA_637
Organism: Heterodera glycines Gene Locus: chr1:9449110-9450376 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 0.899 | 1.256 | 0.953 | 1.013 | 0.779 | 1.019 | 1.105 | 1.351 | 0.821 | 1.298 | 1.462 | 1.535 | 0.797 | 1.353 | 0.474 | 0.86 | 1.214 | 1.7 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_606
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
KRKNKQLVSRNIIRRRAA
|
40-80
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.831
|
0.318
|
0.030
|
0.299
|
0.193
|
0.099
|
0.124
|
0.015
|
0.086
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000506
|
5.000
|
2.000
|
Hsc_gene_22209.t2;Hsc_gene_22209.t3
|
Hsc_gene_1374.t1
|
— | — |
KAH7723580.1 pogo transposable element with KRAB domain-like protein [Aphelenchus avenae]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.866|GO:0110165_0.858|GO:0005622_0.787|GO:0016020_0.765|GO:0043226_0.742|GO:0043229_0.722|GO:0043227_0.700|GO:0043231_0.685|GO:0005634_0.594
|
IPR006600+11-79_17-79_21-78+|IPR009057+16-74+|IPR050863+19-294+
|
SM00674+17-79+
|
PF03221+21-78+Tc5_transposase_DNA-binding_domain
|
— |
PTHR19303+19-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15
|
1.000
|
16-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
40752.950
|
8.788
|
12.000
|
30.387
|
11.050
|
45.856
|
54.144
|
17.403
|
12.983
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
8.415
|
0.909
|
7.665
|
4.413
|
3.242
|
2.263
|
1.016
|
2.773
|
21.885
|
12.045
|
16.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.838
|
2.134
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.