Hg_chrom1_TN10mRNA_642
Organism: Heterodera glycines Gene Locus: chr1:9519937-9521280 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 1.114 | 0.349 | 0.661 | 0.532 | 0.901 | 0.494 | 0.639 | 2.769 | 1.641 | 0.387 | 1.128 | 2.485 | 0.553 | 0.782 | 1.369 | 0.681 | 1.162 | 0.983 | 1.034 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_611
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
81-140
|
0.963
|
— | — | — | — |
0.000
|
— | — |
0.114
|
0.059
|
0.030
|
0.079
|
0.354
|
0.233
|
0.244
|
0.020
|
0.839
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000190
|
5.000
|
6.000
|
Hsc_gene_14965.t1;Hsc_gene_8433.t1;Hsc_gene_8433.t2;Hsc_gene_8448.t1;Hsc_gene_8448.t2;Hsc_gene_8460.t1
|
Hsc_gene_8452.t1;Hsc_gene_8452.t2
|
— | — |
KAI1718261.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+28-52_37-309_104-126_235-259+|IPR017452+43-295+|IPR019424+38-307+|IPR047130+26-306+
|
SM01381+37-309+
|
PF10320+38-307+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+26-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
35118.570
|
8.459
|
6.000
|
12.780
|
15.016
|
34.824
|
65.176
|
7.668
|
5.112
|
45.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
11.649
|
0.154
|
8.915
|
2.749
|
0.986
|
0.979
|
3.044
|
0.280
|
1.382
|
43.515
|
25.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.644
|
4.030
|
-1.595
|
— | — | — | — |
3.601
|
— | — |
-5.324
|
— | — |
No JSON data available for plots.