Hg_chrom1_TN10mRNA_645
Organism: Heterodera glycines Gene Locus: chr1:9529147-9541742 Feature type: polypeptideProtein Sequence
Length: 1,804
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.432 | 0.258 | 0.726 | 0.401 | 0.721 | 1.123 | 3.385 | 0.36 | 0.542 | 1.026 | 0.706 | 0.978 | 0.97 | 3.731 | 0.532 | 0.538 | 0.473 | 0.353 | 0.298 | 0.277 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_614
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.847
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KGEKGLPGPAGPRGKEGRPGQPGP
|
20-44
|
0.931
|
— | — | — | — |
0.000
|
— | — |
0.213
|
0.043
|
0.010
|
0.298
|
0.133
|
0.134
|
0.086
|
0.004
|
0.138
|
0.760
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002956
|
3.000
|
0.000
|
0.000
|
— | — |
P17140.2 Collagen alpha-2(IV) chain [Caenorhabditis elegans]
|
AAA27989.1 alpha-2 type IV collagen, partial [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005201|GO:0005581
|
GO:0005575_0.928|GO:0110165_0.928|GO:0071944_0.834|GO:0008150_0.807|GO:0030312_0.758|GO:0009987_0.734|GO:0003674_0.723|GO:0031012_0.663|GO:0062023_0.663|GO:0032501_0.611|GO:0032502_0.609|GO:0048856_0.609|GO:0007275_0.570|GO:0048731_0.559|GO:0065007_0.534|GO:0005576_0.523|GO:0050789_0.521|GO:0016020_0.507
|
IPR001442+1580-1687_1580-1803_1582-1685_1688-1802_1690-1801+|IPR008160+77-135_131-190_196-250_318-376_366-422_605-658_667-721_813-871_1141-1182_1174-1232_1213-1267_1422-1472_1520-1576+|IPR016187+1582-1689_1689-1801+|IPR036954+1577-1804+|IPR050149+1084-1771+
|
SM00111+1580-1687_1688-1802+
|
PF01391+77-135_131-190_196-250_318-376_366-422_605-658_667-721_813-871_1141-1182_1174-1232_1213-1267_1422-1472_1520-1576+Collagen_triple_helix_repeat_(20_copies)|PF01413+1582-1685_1690-1801+C-terminal_tandem_repeated_domain_in_type_4_procollagen
|
G3DSA:2.170.240.10:FF:000001+1577-1803+Collagen_IV_alpha_1_chain
|
PTHR24023+1084-1771+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;67-1590
|
2.000
|
27-66;1591-1804
|
1t61_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
173966.330
|
5.335
|
-12.500
|
16.297
|
5.543
|
28.437
|
71.563
|
7.982
|
8.315
|
66.796
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2415.558
|
1771.878
|
2236.439
|
2022.105
|
1856.543
|
7297.720
|
945.230
|
5779.071
|
59.893
|
2307.278
|
1344.113
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.155
|
1.990
|
-2.939
|
-0.447
|
-2.467
|
-5.376
|
5.258
|
— | — | — |
No JSON data available for plots.