SCN Proteipedia

Hg_chrom1_TN10mRNA_646

Organism: Heterodera glycines Gene Locus: chr1:9529147-9541742 Feature type: polypeptide

Protein Sequence

Length: 1,772

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.44	0.262	0.729	0.409	0.724	1.129	3.379	0.367	0.552	1.03	0.718	0.996	0.972	3.701	0.541	0.524	0.472	0.342	0.304	0.266	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_614	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.847

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	KGEKGLPGPAGPRGKEGRPGQPGP	20-44	0.931	—	—	—	—	0.000	—	—	0.210	0.042	0.010	0.296	0.133	0.132	0.084	0.004	0.137	0.761

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002956	3.000	0.000	0.000	—	—	P17140.2 Collagen alpha-2(IV) chain [Caenorhabditis elegans]	AAA27989.1 alpha-2 type IV collagen, partial [Caenorhabditis elegans]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005201\|GO:0005581	GO:0005575_0.929\|GO:0110165_0.929\|GO:0071944_0.835\|GO:0008150_0.806\|GO:0030312_0.759\|GO:0009987_0.734\|GO:0003674_0.724\|GO:0031012_0.661\|GO:0062023_0.661\|GO:0032501_0.609\|GO:0032502_0.608\|GO:0048856_0.608\|GO:0007275_0.571\|GO:0048731_0.559\|GO:0065007_0.533\|GO:0005576_0.521\|GO:0050789_0.519\|GO:0016020_0.505	IPR001442+1548-1655_1548-1771_1550-1653_1656-1770_1658-1769+\|IPR008160+77-135_131-181_196-250_286-340_334-389_568-626_635-689_744-794_1088-1145_1142-1200_1229-1284_1297-1354_1488-1544+\|IPR016187+1550-1657_1657-1769+\|IPR036954+1545-1772+\|IPR050149+1052-1739+	SM00111+1548-1655_1656-1770+	PF01391+77-135_131-181_196-250_286-340_334-389_568-626_635-689_744-794_1088-1145_1142-1200_1229-1284_1297-1354_1488-1544+Collagen_triple_helix_repeat_(20_copies)\|PF01413+1550-1653_1658-1769+C-terminal_tandem_repeated_domain_in_type_4_procollagen	G3DSA:2.170.240.10:FF:000001+1545-1771+Collagen_IV_alpha_1_chain	PTHR24023+1052-1739+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-26;67-1558	2.000	27-66;1559-1772	1t61_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.867	171052.150	5.462	-10.500	16.479	5.530	28.555	71.445	8.126	8.352	66.535

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	2415.558	1771.878	2236.439	2022.105	1856.543	7297.720	945.230	5779.071	59.893	2307.278	1344.113

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	-0.155	1.990	-2.939	-0.447	-2.467	-5.376	5.258	—	—	—

No JSON data available for plots.

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