Hg_chrom1_TN10mRNA_647
Organism: Heterodera glycines Gene Locus: chr1:9544266-9545579 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.465 | 0.916 | 1.145 | 0.136 | 0.919 | 0.505 | 0.75 | 1.181 | 0.525 | 0.585 | 2.326 | 2.547 | 0.328 | 1.666 | 0.321 | 1.125 | 0.71 | 1.014 | 0.0 | 1.158 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_615
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
13A06|AF500020.1#op50jg3682.t2
|
13A06|AF5000201#op50jg3682t2
|
— | — | — |
5-Not_Clustered
|
0.868
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KDNKKAAVAASPAKGKASPKGGKSPAKGKAAKVSKKDNKLKAKKETKGIKVKNAKPTKKGKSAKGASKTAKKVQAAKKAPGKDKKSLVKP
|
— | — | — | — | — | — |
0.177
|
— | — |
0.478
|
0.034
|
0.018
|
0.556
|
0.064
|
0.087
|
0.257
|
0.002
|
0.226
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005682
|
1.000
|
1.000
|
Hsc_gene_8449.t1
|
— | — | — |
QLK97568.1 secretory protein 6E07 [Heterodera glycines]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;41-254
|
1.000
|
6-40
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
27301.280
|
10.074
|
16.000
|
31.102
|
7.480
|
49.213
|
50.787
|
19.291
|
11.811
|
57.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
pink
|
2464.704
|
270.098
|
15.217
|
502.808
|
868.393
|
67.230
|
111.688
|
86.751
|
932.931
|
9362.562
|
5749.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.378
|
0.759
|
5.152
|
0.757
|
-3.677
|
0.744
|
— | — | — | — |
-3.277
|
— | — |
No JSON data available for plots.