Hg_chrom1_TN10mRNA_648
Organism: Heterodera glycines Gene Locus: chr1:9545864-9548955 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.958 | 0.642 | 0.609 | 0.49 | 0.452 | 0.77 | 2.353 | 2.092 | 1.669 | 0.267 | 2.768 | 1.961 | 1.018 | 0.36 | 0.756 | 1.061 | 0.891 | 1.357 | 2.076 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_616
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.812
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.219
|
0.226
|
0.029
|
0.217
|
0.688
|
0.679
|
0.547
|
0.002
|
0.227
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000747
|
3.000
|
3.000
|
Hsc_gene_16652.t1;Hsc_gene_23185.t1;Hsc_gene_8456.t1
|
Hsc_gene_8451.t1
|
— | — |
KAI1710658.1 serpentine type 7TM GPCR chemoreceptor srt domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019425+47-89_87-147+
|
— |
PF10321+47-89+Serpentine_type_7TM_GPCR_chemoreceptor_Srt
|
— |
PTHR23021+87-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-170
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
19415.780
|
6.275
|
-1.000
|
14.706
|
20.588
|
32.353
|
67.647
|
8.235
|
6.471
|
44.706
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
196.814
|
12.434
|
12.913
|
29.252
|
7.958
|
1.615
|
2.525
|
7.172
|
15.203
|
821.957
|
476.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.098
|
1.296
|
-1.906
|
-2.284
|
— |
2.047
|
— |
-5.887
|
— |
-6.477
|
— | — |
No JSON data available for plots.