Hg_chrom1_TN10mRNA_649
Organism: Heterodera glycines Gene Locus: chr1:9552475-9555946 Feature type: polypeptideProtein Sequence
Length: 287
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.648 | 1.134 | 0.824 | 0.961 | 1.161 | 1.429 | 0.83 | 2.091 | 1.161 | 0.942 | 0.422 | 0.615 | 1.839 | 1.005 | 1.351 | 0.796 | 1.028 | 1.109 | 1.608 | 0.82 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_617
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-25
|
0.953
|
0.999
|
0.000
|
0.000
|
0.316
|
0.108
|
0.029
|
0.564
|
0.231
|
0.294
|
0.067
|
0.007
|
0.174
|
0.668
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005683
|
1.000
|
1.000
|
Hsc_gene_8455.t1
|
Hsc_gene_8455.t1
|
— |
Q10462.3 Putative carbonic anhydrase 5 [Caenorhabditis elegans]
|
KAH7699574.1 Eukaryotic-type carbonic anhydrase family protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.781|GO:0110165_0.774|GO:0003674_0.765|GO:0008150_0.669|GO:0003824_0.628|GO:0005622_0.590|GO:0005737_0.579|GO:0016020_0.530
|
IPR001148+44-287_46-287_53-286+|IPR018338+142-158+|IPR023561+26-284+|IPR036398+40-287_45-286+
|
SM01057+46-287+
|
PF00194+53-286+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+26-284+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
32810.960
|
6.492
|
0.000
|
25.087
|
15.679
|
47.387
|
52.613
|
13.589
|
11.498
|
49.129
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
320.682
|
4.328
|
5.047
|
3.384
|
16.249
|
44.260
|
15.219
|
24.066
|
0.000
|
1360.775
|
777.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.236
|
1.461
|
-1.525
|
-0.987
|
— | — | — | — | — | — |