Hg_chrom1_TN10mRNA_657
Organism: Heterodera glycines Gene Locus: chr1:9602707-9604263 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 2.094 | 0.345 | 0.654 | 1.185 | 1.458 | 0.451 | 0.711 | 2.528 | 1.153 | 1.364 | 2.23 | 1.975 | 0.456 | 0.484 | 0.677 | 0.466 | 0.431 | 1.094 | 1.255 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_625
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
43-73
|
0.955
|
— | — | — | — |
0.000
|
— | — |
0.436
|
0.368
|
0.006
|
0.595
|
0.226
|
0.166
|
0.192
|
0.001
|
0.074
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001676
|
3.000
|
1.000
|
Hsc_gene_8447.t1
|
Hsc_gene_8447.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.700|GO:0110165_0.689|GO:0005622_0.651|GO:0016020_0.610|GO:0008150_0.598|GO:0043226_0.593|GO:0043229_0.584|GO:0003674_0.554|GO:0043227_0.542|GO:0043231_0.535
|
IPR007010+142-204+|IPR007012+2-136+|IPR011068+141-198+
|
— |
PF04926+142-204+Poly(A)_polymerase_predicted_RNA_binding_domain|PF04928+2-136+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+2-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
24491.600
|
9.011
|
6.500
|
21.801
|
14.218
|
44.076
|
55.924
|
12.796
|
9.005
|
37.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
6.707
|
0.456
|
0.758
|
0.765
|
0.000
|
0.000
|
0.201
|
0.000
|
10.154
|
20.912
|
16.301
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.