Hg_chrom1_TN10mRNA_662
Organism: Heterodera glycines Gene Locus: chr1:9631653-9634581 Feature type: polypeptideProtein Sequence
Length: 349
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.333 | 1.198 | 0.889 | 1.146 | 0.808 | 0.614 | 1.433 | 1.273 | 1.278 | 0.999 | 1.517 | 1.512 | 1.212 | 1.52 | 0.491 | 0.752 | 0.955 | 0.882 | 0.674 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.525
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
RRRRNAKK
|
66-86
|
0.990
|
— | — |
1-20
|
0.985
|
1.000
|
0.000
|
0.000
|
0.232
|
0.284
|
0.041
|
0.214
|
0.426
|
0.107
|
0.218
|
0.015
|
0.224
|
0.697
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005687
|
1.000
|
1.000
|
Hsc_gene_8438.t1
|
Hsc_gene_8438.t1
|
— |
O60513.1 Beta-1,4-galactosyltransferase 4 [Homo sapiens]
|
XP_063878177.1 beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Scylla paramamosain]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016757
|
GO:0008150_0.896|GO:0009987_0.737|GO:0008152_0.711|GO:0003674_0.697|GO:0005575_0.689|GO:0110165_0.689|GO:0044237_0.636|GO:0009058_0.631|GO:0044238_0.622|GO:0044249_0.614|GO:0003824_0.596|GO:1901135_0.563|GO:0016020_0.560|GO:0005622_0.548|GO:1901137_0.546|GO:0016740_0.523
|
IPR003859+26-310_112-131_143-162_181-202_203-221+|IPR027791+169-231+|IPR027995+26-162+|IPR029044+17-308_53-231+
|
— |
PF02709+169-231+N-terminal_domain_of_galactosyltransferase|PF13733+26-162+N-terminal_region_of_glycosyl_transferase_group_7
|
— |
PTHR19300+26-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
349-349
|
1.000
|
1-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
40217.290
|
7.856
|
7.000
|
30.372
|
11.748
|
47.278
|
52.722
|
16.905
|
13.467
|
46.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
2520.790
|
381.676
|
166.007
|
36.842
|
745.915
|
11459.333
|
355.260
|
2275.823
|
8.807
|
5239.029
|
2997.505
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.430
|
-3.511
|
-2.064
|
4.308
|
3.958
|
-5.004
|
-2.451
|
-2.533
|
-7.619
|
— | — | — | — |