Hg_chrom1_TN10mRNA_668
Organism: Heterodera glycines Gene Locus: chr1:9658714-9666238 Feature type: polypeptideProtein Sequence
Length: 706
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.779 | 1.159 | 1.075 | 0.732 | 1.053 | 0.944 | 0.921 | 2.109 | 0.976 | 1.03 | 0.75 | 2.007 | 0.572 | 0.578 | 1.174 | 0.952 | 0.515 | 0.872 | 0.792 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_636
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.520
|
0.084
|
0.010
|
0.555
|
0.245
|
0.315
|
0.068
|
0.093
|
0.088
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000748
|
1.000
|
5.000
|
Hsc_gene_16075.t1;Hsc_gene_26036.t1;Hsc_gene_26036.t2;Hsc_gene_8432.t1;Hsc_gene_8432.t2
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.734|GO:0005575_0.681|GO:0110165_0.681|GO:0005622_0.612|GO:0005737_0.558
|
IPR001870+146-334_329-516_512-700+|IPR003877+212-333_215-331_392-515_395-512_576-699_579-697+|IPR013320+156-333_346-516_528-700+|IPR043136+151-340_341-523_524-706+|IPR044736+199-330_379-512_563-696+|IPR050618+374-533+
|
SM00449+212-333_392-515_576-699+
|
PF00622+215-331_395-512_579-697+SPRY_domain
|
— |
PTHR12864+374-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59
|
1.000
|
60-706
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
78616.030
|
6.317
|
-1.500
|
22.238
|
12.890
|
48.017
|
51.983
|
11.473
|
10.765
|
50.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
225.018
|
9.473
|
26.094
|
18.540
|
11.150
|
16.381
|
254.531
|
19.148
|
0.000
|
851.212
|
486.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.232
|
0.832
|
— |
-0.761
|
— |
3.965
|
— |
3.873
|
-10.527
|
5.069
|
-5.636
|
— | — |
No JSON data available for plots.