Hg_chrom1_TN10mRNA_672
Organism: Heterodera glycines Gene Locus: chr1:9687985-9692787 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.148 | 1.318 | 0.399 | 0.883 | 0.518 | 0.469 | 0.696 | 1.188 | 1.341 | 1.285 | 0.609 | 1.936 | 1.98 | 0.879 | 0.821 | 1.019 | 1.079 | 1.33 | 1.547 | 1.022 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_640
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
39-70
|
0.804
|
8-58
|
0.928
|
— | — |
0.000
|
— | — |
0.073
|
0.079
|
0.012
|
0.127
|
0.334
|
0.354
|
0.316
|
0.057
|
0.795
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005690
|
1.000
|
1.000
|
Hsc_gene_8431.t1
|
Hsc_gene_8431.t1
|
— | — |
KAH7711807.1 major facilitator superfamily transporter, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.960|GO:0009987_0.907|GO:0003674_0.848|GO:0005575_0.816|GO:0110165_0.816|GO:0051179_0.812|GO:0006810_0.811|GO:0051234_0.811|GO:0055085_0.780|GO:0016020_0.748|GO:0005215_0.735|GO:0022857_0.735|GO:0071944_0.593|GO:0005886_0.583
|
IPR011701+120-415+|IPR020846+47-493+|IPR036259+37-269_38-495_298-502+
|
— |
PF07690+120-415+Major_Facilitator_Superfamily
|
— |
PTHR45757+26-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
60649.920
|
9.170
|
21.500
|
15.722
|
14.991
|
36.929
|
63.071
|
10.420
|
5.302
|
53.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
539.865
|
134.724
|
806.967
|
398.401
|
308.875
|
1023.710
|
313.848
|
1145.757
|
90.130
|
744.707
|
464.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.355
|
1.427
|
-0.910
|
-0.399
|
1.744
|
-1.700
|
— |
-1.728
|
— | — | — | — | — |
No JSON data available for plots.