Hg_chrom1_TN10mRNA_677
Organism: Heterodera glycines Gene Locus: chr1:9717978-9720325 Feature type: polypeptideProtein Sequence
Length: 189
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 0.984 | 1.058 | 1.642 | 0.794 | 1.764 | 0.504 | 1.058 | 1.293 | 0.715 | 0.641 | 1.245 | 1.176 | 1.119 | 1.08 | 0.831 | 1.214 | 1.283 | 1.221 | 0.934 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_645
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.994
|
1.000
|
0.000
|
0.000
|
0.210
|
0.358
|
0.027
|
0.334
|
0.126
|
0.145
|
0.130
|
0.009
|
0.198
|
0.596
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005692
|
1.000
|
1.000
|
Hsc_gene_8422.t1
|
Hsc_gene_8422.t1
|
— | — |
KAI1727876.1 ML domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0005575_0.883|GO:0110165_0.882|GO:0009987_0.871|GO:0051179_0.722|GO:0006810_0.713|GO:0051234_0.713|GO:0033036_0.686|GO:0010876_0.674|GO:0006869_0.670|GO:0015850_0.670|GO:0015918_0.670|GO:0003674_0.513|GO:0005622_0.507
|
IPR003172+33-147_34-182+|IPR014756+32-148+
|
SM00737+34-182+
|
PF02221+33-147+ML_domain
|
G3DSA:2.60.40.770:FF:000001+31-154+NPC_intracellular_cholesterol_transporter_2
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-189
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
21255.200
|
6.459
|
0.000
|
22.222
|
11.111
|
46.561
|
53.439
|
11.640
|
10.582
|
54.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
500.008
|
77.775
|
390.774
|
675.890
|
520.159
|
851.337
|
221.972
|
1133.052
|
11.377
|
727.394
|
420.529
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.100
|
2.983
|
0.899
|
-0.410
|
0.726
|
-1.932
|
0.308
|
-2.212
|
-6.143
|
6.104
|
— | — | — |