Hg_chrom1_TN10mRNA_678
Organism: Heterodera glycines Gene Locus: chr1:9733375-9739365 Feature type: polypeptideProtein Sequence
Length: 687
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 1.422 | 0.953 | 1.606 | 0.607 | 1.381 | 0.624 | 1.82 | 1.164 | 0.925 | 0.397 | 2.055 | 1.294 | 1.428 | 1.277 | 1.331 | 0.859 | 0.353 | 1.792 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_646
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRQNSCKMVLQMWREARK
|
— | — |
30-61
|
0.996
|
— | — |
0.338
|
— | — |
0.111
|
0.094
|
0.021
|
0.269
|
0.141
|
0.282
|
0.226
|
0.042
|
0.211
|
0.905
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005693
|
1.000
|
1.000
|
Hsc_gene_8420.t1
|
Hsc_gene_8420.t1;Hsc_gene_8421.t1
|
— |
P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]
|
KAI1721618.1 common central domain of tyrosinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.852|GO:0008150_0.775|GO:0005575_0.680|GO:0110165_0.676|GO:0005488_0.575|GO:0008152_0.568|GO:0005622_0.563|GO:0016020_0.559|GO:0003824_0.542|GO:0043226_0.512|GO:0009987_0.502
|
IPR002227+194-384_212-229_241-246_345-356_365-383_366-377+|IPR003582+536-574_537-570_537-573_591-664_641-663+|IPR008922+160-445_162-446+|IPR050316+121-583+
|
SM00254+536-574_591-664+
|
PF00264+194-384+Common_central_domain_of_tyrosinase|PF01549+537-570_641-663+ShK_domain-like
|
— |
PTHR11474+121-583+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-687
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
77690.730
|
7.397
|
12.500
|
21.397
|
13.683
|
47.453
|
52.547
|
12.518
|
8.879
|
52.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
505.811
|
10.100
|
41.680
|
186.457
|
649.069
|
116.372
|
42.159
|
26.274
|
30.407
|
1788.075
|
1034.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.814
|
4.069
|
2.270
|
1.766
|
-2.461
|
-1.458
|
-2.265
|
0.827
|
-6.013
|
— | — | — | — |
No JSON data available for plots.