Hg_chrom1_TN10mRNA_679
Organism: Heterodera glycines Gene Locus: chr1:9745229-9749838 Feature type: polypeptideProtein Sequence
Length: 533
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.178 | 1.222 | 0.955 | 0.712 | 0.782 | 1.299 | 0.849 | 1.407 | 1.209 | 1.09 | 0.682 | 1.545 | 1.147 | 1.191 | 1.034 | 0.616 | 1.046 | 1.023 | 1.155 | 0.773 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_647
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.581
|
0.390
|
0.060
|
0.676
|
0.028
|
0.107
|
0.096
|
0.356
|
0.235
|
0.610
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005694
|
1.000
|
1.000
|
Hsc_gene_8419.t1
|
Hsc_gene_8419.t1
|
— |
P33216.3 Mannitol 2-dehydrogenase [Cereibacter sphaeroides]
|
WP_085464124.1 mannitol dehydrogenase family protein [Mesorhizobium australicum];SMH38871.1 mannitol 2-dehydrogenase [Mesorhizobium australicum]
|
WP_224670662
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0016491|GO:0019594
|
GO:0003674_0.746|GO:0003824_0.666|GO:0016491_0.543|GO:0008150_0.527|GO:0016614_0.515|GO:0016616_0.514
|
IPR000669+65-75_219-232_259-272_289-304+|IPR008927+324-528+|IPR013118+324-515+|IPR013131+64-316+|IPR013328+324-529+|IPR023027+259-271+|IPR036291+45-322+|IPR050988+47-528+
|
— |
PF01232+64-316+Mannitol_dehydrogenase_Rossmann_domain|PF08125+324-515+Mannitol_dehydrogenase_C-terminal_domain
|
— |
PTHR43362+47-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-533
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
58824.160
|
7.147
|
5.500
|
22.326
|
11.069
|
43.340
|
56.660
|
12.383
|
9.944
|
53.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkred
|
561.400
|
4.286
|
10.042
|
103.185
|
267.445
|
1870.113
|
353.340
|
364.401
|
1.382
|
1340.282
|
766.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.001
|
4.453
|
3.467
|
1.342
|
2.816
|
-2.391
|
-2.480
|
— |
-10.136
|
6.555
|
— | — | — |
No JSON data available for plots.