Hg_chrom1_TN10mRNA_682
Organism: Heterodera glycines Gene Locus: chr1:9758906-9762317 Feature type: polypeptideProtein Sequence
Length: 601
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.161 | 1.2 | 0.605 | 0.23 | 0.416 | 1.28 | 0.812 | 0.915 | 1.183 | 1.304 | 0.807 | 2.055 | 1.34 | 0.96 | 0.713 | 1.141 | 1.255 | 1.361 | 1.024 | 0.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_649
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.132
|
— | — |
0.098
|
0.070
|
0.013
|
0.069
|
0.263
|
0.201
|
0.629
|
0.086
|
0.388
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005695
|
1.000
|
1.000
|
Hsc_gene_8416.t1
|
Hsc_gene_8416.t1
|
— |
Q58DA6.1 UDP-galactose translocator [Bos taurus]
|
KAH7725438.1 Protein NSTP-5 a [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0015165|GO:0016020|GO:0090481
|
GO:0005575_0.864|GO:0110165_0.864|GO:0016020_0.824|GO:0071944_0.817|GO:0008150_0.811|GO:0005886_0.802|GO:0009987_0.760|GO:0005622_0.708|GO:0006810_0.705|GO:0051179_0.705|GO:0051234_0.705|GO:0043226_0.684|GO:0005737_0.669|GO:0043229_0.662|GO:0043227_0.660|GO:0055085_0.648|GO:0043231_0.645|GO:0003674_0.642|GO:0005773_0.609|GO:0012505_0.583|GO:0071705_0.537|GO:0015711_0.523|GO:1901264_0.522|GO:0005215_0.511|GO:0022857_0.511
|
IPR007271+105-264_106-521_354-510+
|
— |
PF04142+105-264_354-510+Nucleotide-sugar_transporter
|
— |
PTHR10231+106-521+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-49;524-601
|
1.000
|
50-523
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
64970.360
|
10.254
|
23.500
|
16.473
|
9.651
|
42.263
|
57.737
|
10.649
|
5.824
|
55.574
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
785.101
|
361.380
|
567.647
|
116.951
|
232.175
|
4754.180
|
475.912
|
2509.734
|
12.512
|
43.690
|
30.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.420
|
-1.765
|
-2.169
|
0.955
|
4.373
|
-3.312
|
-1.034
|
-2.253
|
— | — | — | — | — |
No JSON data available for plots.