Hg_chrom1_TN10mRNA_683
Organism: Heterodera glycines Gene Locus: chr1:9767965-9781937 Feature type: polypeptideProtein Sequence
Length: 2,146
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 1.441 | 0.779 | 0.418 | 1.965 | 1.29 | 0.433 | 1.072 | 1.564 | 1.562 | 1.702 | 2.33 | 1.605 | 0.367 | 0.732 | 0.719 | 0.542 | 0.551 | 1.04 | 0.713 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_650
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKWK,KRKL,KKEINNAEQLLKRSKN,KRIWLVGLKLQRQKKRND,KNGKNKSKNKTKKKKYIKRKKEK
|
— | — | — | — |
1-27
|
0.979
|
1.000
|
0.000
|
0.000
|
0.454
|
0.123
|
0.007
|
0.632
|
0.134
|
0.151
|
0.105
|
0.026
|
0.166
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002962
|
2.000
|
1.000
|
Hsc_gene_8414.t1
|
Hsc_gene_8413.t1;Hsc_gene_8430.t1
|
— | — |
KAK6108511.1 Poly(A) polymerase central domain family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.700|GO:0110165_0.700|GO:0005622_0.682|GO:0043226_0.653|GO:0016020_0.652|GO:0043229_0.631|GO:0043227_0.582|GO:0008150_0.566|GO:0003674_0.560|GO:0043231_0.537
|
IPR007012+1847-1988+
|
— |
PF04928+1847-1988+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1838-2143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1132-1297
|
2.000
|
1-1131;1298-2146
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
252840.370
|
6.396
|
-4.000
|
33.038
|
11.696
|
52.610
|
47.390
|
16.962
|
16.076
|
34.110
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2020.308
|
186.176
|
312.780
|
386.527
|
161.608
|
35.882
|
25.956
|
27.062
|
3854.172
|
5522.220
|
4807.342
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
0.917
|
0.413
|
-1.288
|
-2.158
|
— | — | — | — |
-3.147
|
-4.861
|
— | — |