Hg_chrom1_TN10mRNA_689
Organism: Heterodera glycines Gene Locus: chr1:10022695-10029672 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 0.841 | 1.059 | 0.554 | 1.439 | 1.03 | 0.908 | 1.305 | 0.848 | 1.085 | 1.643 | 1.417 | 1.673 | 0.85 | 1.352 | 0.803 | 0.724 | 0.73 | 0.618 | 0.532 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_656
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKSTEDEKKKKKKRRLPK,RKKNVTAEEAEAKRKKEE,KRIAKKSDDKKSTEDEKKK,KKSDDKKSTEDEKKKKKKR,GGRGTRGRGAGGRGAGHRGGVAPGFGRGRGRGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.842
|
0.160
|
0.010
|
0.605
|
0.076
|
0.032
|
0.045
|
0.004
|
0.086
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002964
|
1.000
|
2.000
|
Hsc_gene_16010.t1;Hsc_gene_16010.t2
|
Hsc_gene_16010.t1;Hsc_gene_16010.t2
|
— |
P34324.2 BTB and MATH domain-containing protein 15 [Caenorhabditis elegans]
|
KAF7633133.1 BTB domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+235-337_241-302_241-341+|IPR011333+227-379_234-337+
|
SM00225+241-341+
|
PF00651+235-337+BTB/POZ_domain
|
— |
PTHR22744+203-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;395-498
|
1.000
|
40-394
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
56707.760
|
9.693
|
21.500
|
34.538
|
11.245
|
52.209
|
47.791
|
20.080
|
14.458
|
44.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1106.839
|
1479.246
|
792.795
|
859.282
|
1029.997
|
886.557
|
1272.046
|
624.385
|
1172.134
|
1359.206
|
1279.032
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.130
|
-0.921
|
0.225
|
0.230
|
-0.201
|
0.532
|
-0.610
|
1.170
|
— | — | — | — | — |
No JSON data available for plots.