Hg_chrom1_TN10mRNA_690
Organism: Heterodera glycines Gene Locus: chr1:10031384-10033399 Feature type: polypeptideProtein Sequence
Length: 210
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.997 | 1.126 | 0.985 | 1.111 | 0.977 | 1.247 | 1.19 | 1.058 | 1.03 | 0.433 | 1.12 | 0.926 | 1.007 | 1.652 | 0.816 | 0.546 | 1.515 | 1.099 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_657
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.896
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.413
|
0.034
|
0.695
|
0.099
|
0.158
|
0.098
|
0.134
|
0.063
|
0.184
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005696
|
1.000
|
1.000
|
Hsc_gene_16011.t1
|
Hsc_gene_16011.t1
|
— |
P28266.1 Nodulation protein L [Sinorhizobium meliloti 1021]
|
WP_206859514.1 sugar O-acetyltransferase [Lysobacter changpingensis]
|
RZM00709
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016407|GO:0016740
|
GO:0005575_0.768|GO:0110165_0.611|GO:0003674_0.591|GO:0003824_0.518|GO:0005622_0.515|GO:0005737_0.515
|
IPR001451+152-186+|IPR011004+26-204+|IPR018357+160-188+|IPR024688+26-80_28-79+|IPR051159+18-209+
|
SM01266+26-80+
|
PF00132+152-186+Bacterial_transferase_hexapeptide_(six_repeats)|PF12464+28-79+Maltose_acetyltransferase_hexapeptide_capping_motif
|
G3DSA:2.160.10.10:FF:000025+23-206+Hexapeptide-repeat_containing-acetyltransferase
|
PTHR23416+18-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
194-210
|
1.000
|
1-193
|
4isx_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
23127.190
|
6.010
|
-1.500
|
26.190
|
9.524
|
43.333
|
56.667
|
13.333
|
12.857
|
54.762
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
310.511
|
169.105
|
232.565
|
207.055
|
396.131
|
667.805
|
555.061
|
391.360
|
143.726
|
268.535
|
215.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.232
|
— | — |
0.904
|
0.767
|
-0.257
|
-0.875
|
0.646
|
— | — | — | — | — |
No JSON data available for plots.