SCN Proteipedia

Hg_chrom1_TN10mRNA_692

Organism: Heterodera glycines Gene Locus: chr1:10120258-10126665 Feature type: polypeptide

Protein Sequence

Length: 514 (Signal peptide: 1-25)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.905	1.584	0.92	0.134	1.07	1.197	0.718	1.362	1.513	1.236	1.002	2.174	1.351	0.786	0.874	0.778	1.021	0.825	0.449	0.858	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_659	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	Hsc_gene_16012	—	—	21-pJ2_J3	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	1-25	0.899	1.000	0.000	0.000	0.473	0.248	0.081	0.687	0.198	0.171	0.119	0.017	0.152	0.309

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002965	2.000	1.000	Hsc_gene_16012.t1	Hsc_gene_16012.t1;Hsc_gene_16013.t1	—	P35668.1 Glutathione synthetase [Xenopus laevis]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.939\|GO:0003674_0.864\|GO:0008152_0.794\|GO:0009987_0.761\|GO:0005575_0.717\|GO:0110165_0.711\|GO:0050896_0.680\|GO:0044237_0.648\|GO:0009058_0.637\|GO:0003824_0.631\|GO:0044249_0.617\|GO:0005622_0.561\|GO:0006790_0.555\|GO:0006518_0.551\|GO:0006575_0.551\|GO:0006749_0.551\|GO:0006750_0.551\|GO:0019184_0.551\|GO:0042398_0.551\|GO:0043043_0.551\|GO:0043603_0.551\|GO:0043604_0.551\|GO:0044272_0.551\|GO:0016874_0.539\|GO:0004363_0.535\|GO:0016879_0.535\|GO:0016881_0.535\|GO:1904091_0.535\|GO:0005737_0.506	IPR004887+239-337+\|IPR005615+24-514_36-513_44-513+\|IPR014042+98-374+\|IPR014049+45-455+\|IPR014709+375-443+\|IPR016185+238-337+\|IPR037013+217-338+	—	PF03199+239-337+Eukaryotic_glutathione_synthase\|PF03917+44-513+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+36-513+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-514	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.664	57818.100	7.016	4.000	25.097	11.089	48.249	51.751	13.619	11.479	47.276

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	pink	603.303	2.286	2.394	940.874	349.842	61.003	42.791	15.538	281.952	1897.463	1205.101

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	8.542	8.719	-1.458	-2.505	-0.503	-2.082	1.603	—	—	—	—	—

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