Hg_chrom1_TN10mRNA_694
Organism: Heterodera glycines Gene Locus: chr1:10168531-10172431 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 1.752 | 0.809 | 0.59 | 0.571 | 2.547 | 0.652 | 1.712 | 1.065 | 1.018 | 1.038 | 2.216 | 0.856 | 1.449 | 0.978 | 0.783 | 0.561 | 0.623 | 0.527 | 1.108 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_661
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_694
|
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPMNAFMVWSRGKRKRMA,KRLRQLHIQQYPNYKYRPK
|
42-68
|
0.979
|
15-54
|
0.941
|
— | — |
0.000
|
— | — |
0.883
|
0.202
|
0.007
|
0.247
|
0.069
|
0.026
|
0.034
|
0.006
|
0.044
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005698
|
1.000
|
1.000
|
Hsc_gene_16015.t1
|
— | — |
Q20201.1 Transcription factor sox-3 [Caenorhabditis elegans]
|
KPJ04752.1 Transcription factor SOX-21 [Papilio xuthus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.899|GO:0032502_0.744|GO:0048856_0.730|GO:0032501_0.720|GO:0009987_0.695|GO:0007275_0.668|GO:0005575_0.664|GO:0003674_0.613|GO:0005488_0.596|GO:0065007_0.590|GO:0050789_0.587|GO:0050794_0.572|GO:0110165_0.570|GO:0005622_0.547|GO:0003676_0.541|GO:0097159_0.541|GO:0048731_0.537|GO:0043226_0.526|GO:0043229_0.521
|
IPR009071+35-105_36-104+|IPR036910+31-111_32-107+|IPR050140+19-160+
|
SM00398+35-105+
|
PF00505+36-104+HMG_(high_mobility_group)_box
|
G3DSA:1.10.30.10:FF:000002+34-111+transcription_factor_Sox-2
|
PTHR10270+19-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;292-292
|
1.000
|
85-291
|
8bx2_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
33026.600
|
9.773
|
16.000
|
22.945
|
10.959
|
49.315
|
50.685
|
15.068
|
7.877
|
47.945
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
186.636
|
83.413
|
241.156
|
91.130
|
50.587
|
60.889
|
51.884
|
127.063
|
26.934
|
531.536
|
315.278
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.303
|
— |
-1.296
|
-0.884
|
— | — |
0.969
|
-1.158
|
-4.452
|
— | — | — | — |
No JSON data available for plots.