Hg_chrom1_TN10mRNA_696
Organism: Heterodera glycines Gene Locus: chr1:10177746-10187868 Feature type: polypeptideProtein Sequence
Length: 798
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.428 | 0.387 | 0.432 | 0.543 | 3.759 | 0.746 | 1.316 | 0.891 | 0.644 | 0.873 | 2.285 | 1.323 | 1.663 | 0.537 | 1.593 | 1.171 | 0.589 | 0.096 | 0.7 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_663
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_696
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
NKKKSDRKQKK
|
— | — | — | — |
1-24
|
0.898
|
0.937
|
0.000
|
0.000
|
0.566
|
0.089
|
0.003
|
0.759
|
0.110
|
0.124
|
0.084
|
0.009
|
0.069
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005699
|
1.000
|
1.000
|
Hsc_gene_16018.t1
|
— | — | — |
WP_341246914.1 RING-HC finger protein [Nereida ignava]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0110165_0.824|GO:0008150_0.806|GO:0005622_0.758|GO:0065007_0.749|GO:0050789_0.746|GO:0009987_0.739|GO:0050794_0.739|GO:0016020_0.650|GO:0003674_0.635|GO:0048518_0.570|GO:0043226_0.560|GO:0043229_0.541|GO:0005737_0.531|GO:0050896_0.528|GO:0048522_0.521|GO:0043227_0.508
|
IPR001841+742-786_742-787+|IPR013083+735-797+
|
SM00184+742-786+
|
PF13920+739-789+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR46858+630-797+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-741
|
1.000
|
742-798
|
3t6p_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
88567.140
|
9.938
|
34.500
|
16.416
|
9.900
|
55.514
|
44.486
|
11.028
|
5.388
|
51.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1084.910
|
19.782
|
429.389
|
343.596
|
95.977
|
28.662
|
110.959
|
31.618
|
4656.076
|
856.931
|
2485.136
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.213
|
3.983
|
-0.213
|
-1.872
|
-1.729
|
1.964
|
— |
1.954
|
2.323
|
-3.572
|
-3.002
|
— | — |