Hg_chrom1_TN10mRNA_697
Organism: Heterodera glycines Gene Locus: chr1:10189205-10197973 Feature type: polypeptideProtein Sequence
Length: 651
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.5 | 1.465 | 0.922 | 0.848 | 0.794 | 1.063 | 0.53 | 1.152 | 1.775 | 1.079 | 0.698 | 1.446 | 1.536 | 1.034 | 1.285 | 1.097 | 1.309 | 0.535 | 1.772 | 1.31 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_664
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_697
|
17-ppJ2_pJ2
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
mitochondria
|
— |
38-58
|
0.945
|
— | — |
1-24
|
0.877
|
1.000
|
0.000
|
0.000
|
0.559
|
0.165
|
0.009
|
0.615
|
0.157
|
0.284
|
0.129
|
0.021
|
0.137
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002966
|
1.000
|
2.000
|
Hsc_gene_16019.t1;Hsc_gene_16019.t2
|
Hsc_gene_16019.t1;Hsc_gene_16019.t2
|
— | — |
KAJ4833851.1 putative E3 ubiquitin-protein ligase log2, partial [Turnera subulata]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.685|GO:0005575_0.606|GO:0110165_0.605|GO:0003824_0.548|GO:0140096_0.523|GO:0008150_0.504|GO:0016740_0.503
|
IPR001841+600-639+|IPR013083+576-650+
|
— |
PF13920+597-643+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR46858+536-649+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
492-596;651-651
|
2.000
|
1-491;597-650
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
75539.090
|
8.266
|
14.500
|
23.041
|
14.593
|
49.155
|
50.845
|
13.210
|
9.831
|
47.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1264.732
|
8.715
|
209.801
|
203.738
|
72.261
|
13.237
|
63.149
|
11.313
|
3259.807
|
2870.017
|
3037.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.357
|
4.409
|
— |
-1.528
|
-2.432
|
2.267
|
— |
2.626
|
— |
-3.820
|
-4.727
|
— | — |