Hg_chrom1_TN10mRNA_698
Organism: Heterodera glycines Gene Locus: chr1:10199108-10203963 Feature type: polypeptideProtein Sequence
Length: 320
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.126 | 1.381 | 0.739 | 2.155 | 0.156 | 2.244 | 0.893 | 0.156 | 1.181 | 1.014 | 0.142 | 0.919 | 1.042 | 2.464 | 1.339 | 0.625 | 0.973 | 0.852 | 0.24 | 0.551 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_665
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_16020
|
Hg_chrom1_TN10mRNA_698
|
8-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-25
|
0.981
|
1.000
|
0.000
|
0.000
|
0.241
|
0.266
|
0.036
|
0.322
|
0.057
|
0.045
|
0.045
|
0.040
|
0.178
|
0.914
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005700
|
1.000
|
1.000
|
Hsc_gene_16020.t1
|
Hsc_gene_16020.t1
|
— | — |
KAF7635817.1 ShKT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+149-190_150-189_208-249_209-248+
|
SM00254+149-190_208-249+
|
PF01549+150-189_209-248+ShK_domain-like
|
G3DSA:1.10.10.1940:FF:000002+145-190+PHAryngeal_gland_Toxin-related
|
PTHR46219+99-249+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
264-320
|
1.000
|
1-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
34227.360
|
8.239
|
8.500
|
12.812
|
6.250
|
37.812
|
62.188
|
7.812
|
5.000
|
62.188
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
376.665
|
35.266
|
37.342
|
25.724
|
36.703
|
90.420
|
30.037
|
58.080
|
60.321
|
1485.080
|
874.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.592
|
-0.428
|
0.480
|
1.316
|
-1.580
|
— |
-0.803
|
-4.716
|
— |
-5.101
|
— | — |