Hg_chrom1_TN10mRNA_7
Organism: Heterodera glycines Gene Locus: chr1:127627-134242 Feature type: polypeptideProtein Sequence
Length: 731
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 1.654 | 0.97 | 0.943 | 1.026 | 1.333 | 0.505 | 2.189 | 0.973 | 1.165 | 0.643 | 1.368 | 1.216 | 0.658 | 1.145 | 1.524 | 0.718 | 1.016 | 0.316 | 0.483 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_7
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.490
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKIESDVMKANRKRRAA,RKRRAAAAAVRQRRRRQQ,KANRKRRAAAAAVRQRRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.354
|
0.363
|
0.018
|
0.654
|
0.095
|
0.171
|
0.186
|
0.142
|
0.159
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001628
|
2.000
|
2.000
|
Hsc_gene_14959.t1;Hsc_gene_1707.t1
|
Hsc_gene_1707.t1;Hsc_gene_23978.t1
|
— |
Q9NQ89.1 Protein C12orf4 [Homo sapiens]
|
KAH7722634.1 Protein C55A6.10 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.913|GO:0005622_0.836|GO:0005737_0.719|GO:0008150_0.623|GO:0016020_0.571|GO:0009987_0.569|GO:0065007_0.537|GO:0050789_0.526|GO:0043226_0.524|GO:0050794_0.513|GO:0043229_0.507
|
IPR019311+41-500_398-725_556-723+|IPR043472+550-637_562-632+
|
— |
PF10154+41-500_556-723+Uncharacterised_conserved_protein_(DUF2362)
|
— |
PTHR16525+398-725+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
461-522
|
2.000
|
1-460;523-731
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
81429.360
|
6.705
|
4.000
|
25.718
|
10.807
|
53.078
|
46.922
|
14.227
|
11.491
|
52.668
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
807.441
|
481.178
|
747.561
|
680.683
|
858.337
|
697.253
|
892.192
|
491.103
|
561.723
|
1293.147
|
979.679
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.405
|
0.363
|
— |
0.303
|
-0.285
|
0.365
|
-0.610
|
1.003
|
— | — | — | — | — |
No JSON data available for plots.