Hg_chrom1_TN10mRNA_700
Organism: Heterodera glycines Gene Locus: chr1:10217756-10220824 Feature type: polypeptideProtein Sequence
Length: 555
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.461 | 1.425 | 1.179 | 0.435 | 1.441 | 1.617 | 0.644 | 0.811 | 1.441 | 1.217 | 1.42 | 1.272 | 1.351 | 0.52 | 1.25 | 0.875 | 0.65 | 0.764 | 1.525 | 0.689 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_667
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_700
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKIDRWNEKLSNVKRKVL
|
— | — | — | — |
1-24
|
0.984
|
1.000
|
0.000
|
0.000
|
0.373
|
0.298
|
0.056
|
0.664
|
0.145
|
0.343
|
0.256
|
0.011
|
0.209
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001677
|
2.000
|
2.000
|
Hsc_gene_16023.t1;Hsc_gene_19133.t1
|
Hsc_gene_16022.t1
|
— | — |
KHN83931.1 Protein UBASH3A -like protein [Toxocara canis]
|
No
|
-0.510
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.935|GO:0110165_0.933|GO:0005622_0.879|GO:0016020_0.864|GO:0043226_0.843|GO:0003674_0.835|GO:0043229_0.813|GO:0005737_0.805|GO:0043227_0.769|GO:0043231_0.760|GO:0003824_0.710|GO:0016787_0.687|GO:0016788_0.661|GO:0016791_0.650|GO:0042578_0.650|GO:0005634_0.632
|
IPR013078+273-342_273-517_274-347+|IPR029033+269-517_272-350+|IPR051710+273-499+
|
SM00855+273-517+
|
PF00300+274-347+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR16469+273-499+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
344-397;553-555
|
2.000
|
1-343;398-552
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
64796.670
|
7.921
|
6.500
|
32.252
|
10.811
|
54.775
|
45.225
|
17.117
|
15.135
|
41.081
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
3419.004
|
19.939
|
596.592
|
630.412
|
68.116
|
20.808
|
86.528
|
22.751
|
18571.099
|
487.887
|
8237.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.676
|
4.847
|
0.188
|
-3.243
|
-1.696
|
2.068
|
— |
2.063
|
5.145
|
-4.724
|
— | — | — |