Hg_chrom1_TN10mRNA_701
Organism: Heterodera glycines Gene Locus: chr1:10225798-10227174 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 1.114 | 0.544 | 1.239 | 0.998 | 3.071 | 0.356 | 0.898 | 1.198 | 1.214 | 0.998 | 3.17 | 0.499 | 0.921 | 1.711 | 0.599 | 1.178 | 0.544 | 0.0 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_668
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_701
|
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKQQRRTKANCRERNR
|
8-43
|
0.850
|
— | — | — | — |
0.000
|
— | — |
0.759
|
0.205
|
0.010
|
0.432
|
0.060
|
0.059
|
0.166
|
0.014
|
0.091
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005702
|
1.000
|
1.000
|
Hsc_gene_16024.t1
|
Hsc_gene_16024.t1
|
— |
P46581.1 Neurogenic differentiation factor 1 [Caenorhabditis elegans]
|
XP_001895166.2 neurogenic differentiation factor, putative [Brugia malayi];VIO91937.1 neurogenic differentiation factor, putative [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.807|GO:0009987_0.773|GO:0065007_0.754|GO:0050789_0.742|GO:0050794_0.734|GO:0032501_0.713|GO:0032502_0.687|GO:0048856_0.684|GO:0007275_0.662|GO:0048731_0.651|GO:0005575_0.650|GO:0110165_0.644|GO:0003674_0.632|GO:0005488_0.632|GO:0007399_0.604|GO:0005622_0.574|GO:0016020_0.521|GO:0043226_0.518|GO:0043229_0.503
|
IPR011598+10-65_11-65_16-71+|IPR036638+3-70_7-76+|IPR050359+6-130+
|
SM00353+16-71+
|
PF00010+11-65+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR19290+6-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;163-167
|
1.000
|
25-162
|
2ql2_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
19126.200
|
10.150
|
11.500
|
25.749
|
4.790
|
53.892
|
46.108
|
16.766
|
8.982
|
42.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
12.494
|
9.082
|
25.380
|
12.701
|
6.733
|
5.230
|
31.053
|
21.218
|
1.382
|
11.851
|
7.364
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.260
|
— |
-0.893
|
-0.946
|
— |
2.579
|
1.922
|
0.690
|
— | — | — | — | — |
No JSON data available for plots.