Hg_chrom1_TN10mRNA_705
Organism: Heterodera glycines Gene Locus: chr1:10239117-10242223 Feature type: polypeptideProtein Sequence
Length: 412
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.242 | 0.397 | 0.837 | 0.324 | 1.058 | 0.462 | 1.214 | 1.618 | 1.476 | 0.257 | 1.285 | 2.495 | 0.513 | 1.684 | 1.699 | 1.035 | 0.846 | 1.12 | 1.071 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_672
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.117
|
0.024
|
0.076
|
0.332
|
0.145
|
0.127
|
0.059
|
0.806
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005705
|
1.000
|
1.000
|
Hsc_gene_16027.t1
|
Hsc_gene_16027.t1;Hsc_gene_16028.t1
|
— |
E7F7V7.1 Galanin receptor 2b [Danio rerio]
|
KAI1726415.1 serpentine type 7TM GPCR chemoreceptor srw domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0008528|GO:0016020
|
GO:0008150_0.952|GO:0009987_0.905|GO:0065007_0.836|GO:0003674_0.828|GO:0050789_0.816|GO:0050896_0.811|GO:0050794_0.799|GO:0051716_0.783|GO:0023052_0.760|GO:0007154_0.752|GO:0060089_0.750|GO:0038023_0.749|GO:0007165_0.740|GO:0005488_0.725|GO:0007186_0.725|GO:0004888_0.723|GO:0004930_0.679|GO:0007218_0.678|GO:0042277_0.661|GO:0001653_0.658|GO:0008528_0.657|GO:0004966_0.650|GO:0008188_0.650|GO:0042923_0.650|GO:0005575_0.554|GO:0110165_0.549
|
IPR000276+122-138+|IPR017452+51-339+|IPR019427+47-355+
|
— |
PF10324+47-355+Serpentine_type_7TM_GPCR_chemoreceptor_Srw
|
— |
PTHR46895+11-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
47210.710
|
10.474
|
29.000
|
16.505
|
16.505
|
44.175
|
55.825
|
12.379
|
4.126
|
47.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
134.615
|
56.870
|
760.564
|
204.975
|
123.638
|
56.508
|
10.548
|
330.959
|
3.598
|
7.221
|
5.668
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.513
|
1.713
|
-1.783
|
-0.761
|
-1.116
|
-2.412
|
2.446
|
-4.830
|
— |
5.982
|
— | — | — |
No JSON data available for plots.