Hg_chrom1_TN10mRNA_718
Organism: Heterodera glycines Gene Locus: chr1:10492635-10496164 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 0.811 | 0.581 | 0.301 | 0.921 | 1.416 | 0.554 | 1.017 | 1.68 | 1.218 | 0.749 | 1.539 | 1.13 | 0.727 | 1.661 | 1.121 | 1.239 | 1.101 | 0.447 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
3-23
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.054
|
0.231
|
0.015
|
0.172
|
0.723
|
0.345
|
0.350
|
0.034
|
0.548
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005710
|
1.000
|
1.000
|
Hsc_gene_25720.t1
|
Hsc_gene_25720.t1;Hsc_gene_25720.t2;Hsc_gene_25720.t3
|
— |
Q27433.1 Mechanosensory protein 2 [Caenorhabditis elegans]
|
KAF7635912.1 PHB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.932|GO:0110165_0.932|GO:0016020_0.882|GO:0071944_0.810|GO:0005886_0.805|GO:0008150_0.782|GO:0009987_0.612|GO:0043226_0.567|GO:0003674_0.566|GO:0043227_0.514
|
IPR001107+105-264_108-280+|IPR001972+112-134_161-182_196-213_216-239_240-258_259-280_284-307+|IPR036013+138-270_144-254+|IPR043202+20-339+
|
SM00244+105-264+
|
PF01145+108-280+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000002+144-254+band_7_protein_AGAP004871
|
PTHR10264+20-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
9oh9_P
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
38476.510
|
10.506
|
18.500
|
23.837
|
8.721
|
48.256
|
51.744
|
15.116
|
8.721
|
47.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
steelblue
|
313.753
|
226.092
|
614.397
|
254.075
|
87.699
|
125.635
|
41.356
|
545.180
|
354.046
|
396.725
|
378.434
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.212
|
— |
-1.165
|
-1.565
|
0.532
|
-1.593
|
2.020
|
-3.582
|
— | — | — | — | — |
No JSON data available for plots.