Hg_chrom1_TN10mRNA_72
Organism: Heterodera glycines Gene Locus: chr1:481818-483006 Feature type: polypeptideProtein Sequence
Length: 141
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.99 | 1.649 | 0.645 | 0.978 | 1.537 | 1.455 | 0.338 | 0.709 | 1.261 | 1.246 | 1.397 | 0.417 | 1.773 | 0.682 | 0.579 | 0.811 | 0.93 | 1.289 | 0.0 | 0.417 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_68
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-19
|
0.941
|
1.000
|
0.000
|
0.000
|
0.307
|
0.529
|
0.059
|
0.421
|
0.225
|
0.045
|
0.066
|
0.036
|
0.105
|
0.727
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001633
|
4.000
|
0.000
|
0.000
|
— | — |
P90698.1 Cystatin cpi-1 [Brugia malayi]
|
KAI1719396.1 cystatin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004869
|
GO:0005575_0.770|GO:0110165_0.770|GO:0003674_0.612|GO:0008150_0.612|GO:0005488_0.608|GO:0005515_0.600|GO:0098772_0.517
|
IPR000010+23-130_33-104_34-131+|IPR046350+34-122+
|
SM00043+23-130+
|
PF00031+33-104+Cystatin_domain
|
— |
PTHR46186+2-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-141
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
15836.170
|
6.458
|
0.000
|
26.241
|
9.220
|
50.355
|
49.645
|
13.475
|
12.766
|
48.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
998.122
|
1.376
|
0.703
|
1.171
|
2.486
|
461.320
|
11.580
|
10985.613
|
0.000
|
67.693
|
38.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
7.555
|
-5.306
|
4.475
|
-9.748
|
— | — | — | — | — |