Hg_chrom1_TN10mRNA_721
Organism: Heterodera glycines Gene Locus: chr1:10507252-10508982 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.36 | 0.557 | 0.384 | 0.511 | 0.929 | 0.597 | 0.975 | 1.857 | 1.581 | 0.717 | 2.13 | 2.244 | 0.536 | 0.625 | 1.035 | 1.142 | 0.971 | 1.071 | 1.065 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_687
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKAKASLTIIKKLLR,RKNSGYHPLLNRKAKA
|
46-75
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.144
|
0.128
|
0.046
|
0.124
|
0.312
|
0.157
|
0.181
|
0.031
|
0.760
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000718
|
4.000
|
2.000
|
Hsc_gene_18138.t1;Hsc_gene_25718.t1
|
— | — | — |
KAI1709102.1 sre G protein-coupled chemoreceptor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+94-355+
|
— |
PF03125+94-355+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR23128+17-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
40411.340
|
9.166
|
9.500
|
15.877
|
15.042
|
39.554
|
60.446
|
9.749
|
6.128
|
46.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
58.924
|
1.361
|
8.188
|
6.269
|
1.022
|
6.228
|
3.040
|
17.848
|
0.000
|
241.311
|
137.892
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.349
|
2.060
|
— |
-2.671
|
2.636
|
— |
1.415
|
-2.412
|
— | — |
-7.212
|
— | — |
No JSON data available for plots.