Hg_chrom1_TN10mRNA_723
Organism: Heterodera glycines Gene Locus: chr1:10514756-10520022 Feature type: polypeptideProtein Sequence
Length: 634
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 0.844 | 0.66 | 0.761 | 0.815 | 1.052 | 0.526 | 1.183 | 1.192 | 1.236 | 0.526 | 2.134 | 1.753 | 1.062 | 1.384 | 1.239 | 0.853 | 0.98 | 1.335 | 1.345 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_688
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.028
|
0.124
|
0.005
|
0.101
|
0.345
|
0.332
|
0.276
|
0.029
|
0.564
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001679
|
2.000
|
2.000
|
Hsc_gene_25717.t1;Hsc_gene_25717.t2
|
Hsc_gene_25717.t1;Hsc_gene_25717.t2
|
— |
Q22549.1 Innexin-10 [Caenorhabditis elegans]
|
KAH7729790.1 CBN-INX-20 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.895|GO:0110165_0.893|GO:0008150_0.808|GO:0009987_0.693|GO:0030054_0.635|GO:0016020_0.546|GO:0051179_0.545|GO:0006810_0.542|GO:0051234_0.542|GO:0003674_0.539|GO:0071944_0.524|GO:0005911_0.523|GO:0070161_0.523|GO:0065007_0.521|GO:0005886_0.515
|
IPR000990+1-389_16-387_21-381_44-55_72-81_101-123_202-216_251-260_275-291+
|
— |
PF00876+21-381+Innexin
|
— |
PTHR11893+1-389+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
614-634
|
1.000
|
1-613
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
72496.660
|
8.726
|
18.500
|
21.136
|
14.984
|
42.744
|
57.256
|
12.618
|
8.517
|
47.634
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
838.628
|
21.292
|
263.665
|
93.455
|
30.457
|
31.998
|
28.187
|
66.578
|
898.895
|
2793.963
|
1981.791
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.403
|
1.997
|
-1.389
|
-1.654
|
— | — |
0.953
|
-1.099
|
— |
-3.097
|
-3.238
|
— | — |
No JSON data available for plots.